Ben Viggiano on X: “To get all of these tools working together in the same codebase, you o…”

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Ben Viggiano on X: “To get all of these tools working together in the same codebase, you o…” | PeekX

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Ben Viggiano

@bviggiano_13

Jun 23

The core functionality of proto-tools is one consistent interface. AlphaFold3, ProteinMPNN, Evo 2, and BLAST all take the same shape. You build an Input, optionally add a Config, call run_tool(), and get an Output with results and metadata.

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Ben Viggiano

@bviggiano_13

Replying to @bviggiano_13

To get all of these tools working together in the same codebase, you often have to solve a conflicting dependency problem. Different tools want different and often incompatible versions of CUDA, PyTorch, or Python, and some are system binaries like BLAST. proto-tools solves this

Jun 23, 2026, 3:09 PM UTC

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